diff options
| -rwxr-xr-x | ncbi/dbsnp/dbsnp.py | 12 |
1 files changed, 7 insertions, 5 deletions
diff --git a/ncbi/dbsnp/dbsnp.py b/ncbi/dbsnp/dbsnp.py index 491fce9..9878df7 100755 --- a/ncbi/dbsnp/dbsnp.py +++ b/ncbi/dbsnp/dbsnp.py @@ -41,7 +41,7 @@ def get_pmids(interm): usehistory="y")) print("Found a total of " + search_results["Count"] + " results using search string '" + interm + "'") - return search_results + return(search_results) elif isinstance(interm, list): searchstring = " OR ".join(interm) @@ -77,6 +77,7 @@ def get_abstracts(results): for abst in root.iter('Abstract'): for sec in abst.iter('AbstractText'): abstracts_list.append(sec.text) + print(abstracts_list) return(abstracts_list) @@ -98,10 +99,11 @@ def main(): for x in rsids: print(x) for x in rsids: - get_pmids(x) - time.sleep(0.5) + pmids = get_pmids(x) + abstracts = get_abstracts_from_list(pmids) + for thing in abstracts: + print(thing) return() if __name__ == '__main__': - main() - + main()
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