blob: 8fb998b20ad6f15f286f4636c20cfed46c1529de (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
|
#!/usr/bin/env python3
import requests
BASE_URL = "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?"
# Example https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=snp&term=snp_pubmed_cited[sb]&retmax=200000&retstart=1000&retmode=json
def db_query(**kwargs):
args = []
for key, value in kwargs.items():
args.append(key+"="+str(value))
qstring = "&".join(args)
print(qstring)
resp = requests.get(BASE_URL + qstring)
if resp.status_code == 200:
results = resp.json()
return(results)
else:
print("You've encountered an error and we can't return your results")
def main():
results = db_query(db="snp", term="snp_pubmed_cited[sb]", retmax=200000, retstart=1000, retmode="json")
print(results)
return()
if __name__ == '__main__':
main()
|
